It was most probably a short story, where a young son of one the brightest scientists surpasses father's intelligence while fresh out of kindergarten. At the end of the story father becomes overly jealous and the son with his fellow little colleagues leaves him for good on his way to become a posthuman.
Answer
If it's old, there is a good chance this is the 1946 story "Absalom" by Henry Kuttner. The son and his fellow mutants at the end psychically modify the dad so he can't harm the son in any way. But he can still nurse a secret hope for revenge, when the son himself has a child...
More information here: "Henry Kuttner's "Absalom" (short story, non-genre): Generation gap can be a major source of parents' heartache", Variety SF
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